上海同济大学 生命科学与技术学院 黄金艳（讲师）导师简介

 
 Tongji University 1011 Room Siping Road 1239, Shanghai, 200092
TRAINING

Tongji University, Shanghai, China        2004–2007

Ph.D., in Chemistry, Research focuses on Bioinformatics.

Tongji University, Shanghai, China        2001 – 2004

Master in Chemistry, Research focuses on Bioinformatics and Chemometrics.

Tongji University, Shanghai, China        1997 – 2001

B.S. in Chemistry, Department of Chemistry

RESEACH EXPERIENCES

Post doctor at Foundation Jean Dausset-Centre d'Etude du Polymorphisme Humain (CEPH) and Centre National de Génotypage (CNG/CEA), France 2009.10-2011.10

· Working on association analysis for genome-wide single-nucleotide polymorphisms (SNPs) and gene expression data. Under the supervision of Professor Mark Lathtrop.

Bioinformatics, school of life science and technology, Tongji University 2007-Beijing Language and culture University 2009.3-2009.10

· French course learning, pass TEF test.

Academic Visitors of center of bioinformatics, Peking University, Jun-Aug, 2008

· Identify genome-wide transcription factor binding sites using Chromatin ImmunoPrecipitation coupled with DNA microarray analysis (ChIP-chip)

· Identification of the regulatory mechanisms of induce Pluritotent Stem(iPS) cell by integrating the data from ChIP-chip, gene expression profiling and sequence motif finding

International Summer Universities, Hessen, Germany Jun-Aug, 2006

· Biotech Ethics

· Intellectual Property Rights and Law

· Intellectual Property Rights and Business

· Biotech Applications

HONORS AND AWARDS

2007       Young elites of research in Tongji University, 2007.

2006       Invited to visit Max-Planck Polymer Institute in Mainz, 2006.

2006       “Hersbit” first prize scholarship in Shanghai, only one for first class. This scholarship is supported by Hersbit Company.

2006       International Summer Universities, Hessen, Germany Full scholarship.

2006       First prize scholarship for network system design in Tongji University.

2005       First prize scholarship for network knowledge contest in Tongji University.

2005       The Internet Elite’s Summer Camp in China University, Support by China Education Government.

peer-reviewed PUBLICATIONS

1. Shen, Li; Gao, Ge; Zhang, Ying; Zhang, He,; Ye, Zhi-Qiang; Huang, Shichao; Huang, Jinyan; Kang, Jiu-Hong, A single amino acid substitution confers enhanced methylation activity of mammalian Dnmt3b on chromatin DNA, Nucleic Acids Research, (2010), 10:1-12.

2. Ganqiang Liu, Min Ding, Haiyun Wang, Jinyan Huang, Qing Jing, Bairong Shen, Pathway analysis of microRNAs in mouse heart development, Int. J. Bioinformatics Research and Applications, (2010) 6:12-20.

3. Jinyan Huang, Taotao Chen, Xiaosong Liu, Jing Jiang, Jinsong Li, Dangsheng Li, X Shirley Liu, Wei Li1, Jiuhong Kang1, Gang Pei, More synergetic cooperation of Yamanaka factors in induced pluripotent stem cells than in embryonic stem cells, Cell Research (2009) 19:1127–1138.

4. Xiaosong Liu, Jinyan Huang, Taotao Chen, Ying Wang, Shunmei Xin, Jian Li, Gang Pei, Jiuhong Kang, Yamanaka factors critically regulate the developmental signaling network in mouse embryonic stem cells, cell research, 12 (2008), 1-13.

5. Jinyan haung et.al. Identification of Phosphorylation Sites Using SVMs, IEEE, 2008.

6. Jinyan Huang, Tonghua Li, Kai Chen, Juanfang Wu, An Approach of Encoding for Prediction of Splice Sites using SVM, BIOCHIMIE 88 (2006) 923–929.

7. Jinyan Huang, Tonghua Li, Kai Chen, Using SVM to detect splicing junction sites in DNA sequences, Proceedings of International Conference on Chemometrics and Bioinformatics in Asia, 2004, 178-179.

8. Jinyan Huang, Li Tonghua, Finding Phoshporylation Sites Using SVMs, Proceedings of Computational Methods in Toxicology & Pharmacology Integrating Internet Resources, 2005, 72.

9. Jinyan Huang, Tonghua Li, Kai Chen, Knowledge base encoding applied in splice-site recognition, Journal of Tongji University, 11(2007), 1548-15451.

10. Kailin Tang, Tonghua Li, Kai Chen, Jinyan Huang, Application of kernel method to classify SELDI-TOF proteomics data, Computers and Applied Chemistry, (2006), 240-245.

RESEARCH SUPPORT/FUNDING

1. Title: The study of regulation network of gene and signal in induced pluripotent stem cells National Natural Science Foundation of China 2009-2012

2. Title: The key interaction network study for gene and signal in induced pluripotent stem cells Ministry of Education of the People’s Republic of China 2009-2012

3. Title: Prediction of phosphorylation site using support vector machine. Young excellent people funding of the Tongji University 2007-2010

4. Title: The constructing of bioinformatics teaching internet platform. Funding for teaching improvement of Tongji University 2009-2011

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